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Note that on Windows machines if you have installed the version of Protege that comes with its own jvm, you may need to change the path to java to jre\bin\java.exe. Im new here but im ready to read a lot =) thnx everyone java out-of-memory owl ontology protege4 share|improve this question asked Nov 20 '13 at 0:53 PzP01 1814 2 Find this file. You can also try to decrease the rules you are using or axioms. –loopasam Nov 20 '13 at 9:56 1 The memory consumption will depend on the expressivity of the http://spamdestructor.com/how-to/protege-out-memory-error.php

It can be loaded in about 2.33GB of memory and the final memory required is about 1.12GB and it loads fairly quickly. (It contains 6.14 million axioms). Autos. _______________________________________________protege-owl = mailing list[hidden email]https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 _______________________________________________ protege-owl mailing list [hidden email] https://mailman.stanford.edu/mailman/listinfo/protege-owlInstructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 Jane Eisenstein-2 Reply | Threaded Open this post in threaded view ♦ By using our website, you agree to our use of cookies. If the error 500 arises, then there is a problem with the hosting configuration.

How To Increase Java Heap Size In Windows

Only, I'm absent for 2 weeks and will continue on September, 30th. Can we feed external data to xDB? asked 2 years ago viewed 571 times Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Related 6Using Protege owl ontology on Android1How to read out specific values from Please Log in or Create an account to join the conversation.

  1. If you set it too low then you will get "out of memory" errors.
  2. is there anyway i can use the form in > Protege 4.3.
  3. Contents 1 Start Protege by Protege.exe/Protege or by double-cliking on the Protege icon (Windows/Linux) 2 Start Protege by double-clicking on the Protege icon (Mac) 3 Start Protege by double-clicking on the
  4. Because in my work i need to use the Form as input > interface to the ontology.
  5. Solutions: Either you assign more memory to the JVM (xmx) or you have to use a bigger computer.
  6. Read more on setting the heap size as an argument for generic Java applications here and here.
  7. welcome if you can configure the Protégé Editor to claim more memory.do the following: 1- There is a file in your Protege installation directory called 'Protege.lax'.
  8. However, if I again enable the cron, then the problem is back again, and I have to disable it again as above.
  9. Privacy policy About Protege Wiki Disclaimers current community chat Stack Overflow Meta Stack Overflow your communities Sign up or log in to customize your list.

What is summer in Spanish? "Estío" vs "verano" How do I enable outgoing connections? (ELI5) Would combining all German articles to just one article have a real negative effect on the Sorry if this isn’t the answer that you would want, but I hope it explains what the issue is. How can I have a transitive property in protege 3.x? I get a blank frontpagepage with the the following error: Fatal error: Out of memory (allocated 33292288) (tried to allocate 10032289 bytes) in /home/j........./administrator/components/com_securitycheckpro/models/filemanager.php on line 669 Any ideas what causes

Thanks, Matthew On 12 Sep 2013, at 23:09, EddyVanderlinden <[hidden email]> wrote: Thanks Matthew, I'll follow your advice. How To Check Java Heap Size In Linux Samson On 10/10/13 12:14 PM, Matthew Horridge wrote: Can you increase it some more?  If you have 3GB, try something like Xmx2000M Cheers, Matthew On 10 Oct 2013, at 07:26, Danny Maybe I'm starting Protégé incorrectly or need a different switch? > > Thanks for any help. > > > WARNING: LINE: 482092 Expected white space at pos: 6 LINE: > http://protege-project.136.n4.nabble.com/How-to-increase-Java-heap-size-for-Protege-Editor-td6229.html Cheers, Matthew On 12 Sep 2013, at 04:45, EddyVanderlinden <[hidden email]> wrote: > Hello, > > We want to upload an ontology of 228 MB to Webprotégé

Some problem with the turtle parser causes it to fail and then the OBO parser takes over, happily trying to parse the file and consuming lots of memory. Set a 512M value in the 'Memory limit' field (or in the php.ini file). 3. thanks again for your input  RegardOn Fri, Oct 11, 2013 at 2:05 PM, Samson Tu <[hidden email]> wrote: Hi, The maximum memory for Java VM you can specify depends on whether There are various ways to set this up and you need to choose a way that is appropriate for your installation - please take a look at the tomcat documentation for

How To Check Java Heap Size In Linux

A rule of thumb is that you should not set this parameter larger than about 80% of your free physical memory. http://protege-project.136.n4.nabble.com/Error-Out-of-memory-detected-td4656338.html To sort this out I renamed /plugins/system/securitycheckpro_cron/securitycheckpro_cron.php to something else, and viola the site was back up running again. How To Increase Java Heap Size In Windows what are my options? Thanks, Matthew On 12 Sep 2013, at 23:09, EddyVanderlinden <[hidden email]> wrote: Thanks Matthew, I'll follow your advice.

Free forum by Nabble Edit this page To use Google Groups Discussions, please enable JavaScript in your browser settings, and then refresh this page. . If you have no problems before the migration, maybe your new hosting provider doesn't allow memory changes or it assign your websites a low value. By default the Protege.lax file specifies a heap of 100MB for Protege 3.x and 200MB for Protege 4. Unfortunately, I can’t give you an exact date for this update (there are a couple of plugins that I would like to see updated to use version the OWL API 4.0.0

Regards. java:1508) at org.obolibrary.oboformat.parser.OBOFormatParser.parseWs(OBOFormatPars er.java:1372) at org.obolibrary.oboformat.parser.OBOFormatParser.getParseTag(OBOFormat Parser.java:885) at org.obolibrary.oboformat.parser.OBOFormatParser.parseHeaderClause(OBO FormatParser.java:509) Uncaught Exception in thread AWT-EventQueue-0 java.lang.OutOfMemoryError: Java heap space Please Log in or Create an account to join the conversation. http://spamdestructor.com/how-to/psp-memory-stick-free-space-error.php java:1508) at org.obolibrary.oboformat.parser.OBOFormatParser.parseWs(OBOFormatPars er.java:1372) at org.obolibrary.oboformat.parser.OBOFormatParser.getParseTag(OBOFormat Parser.java:885) at org.obolibrary.oboformat.parser.OBOFormatParser.parseHeaderClause(OBO FormatParser.java:509) Uncaught Exception in thread AWT-EventQueue-0 java.lang.OutOfMemoryError: Java heap space at java.util.concurrent.ConcurrentHashMap.putVal(Unknown Source) at java.util.concurrent.ConcurrentHashMap.put(Unknown Source) at sun.util.resources.ParallelListResourceBundle.loadLookupTablesIfNeces sary(Unknown Source) at sun.util.resources.ParallelListResourceBundle.handleKeySet(Unknown

is there anyway i can use  the form in Protege 4.3. If you set it too high then your system will hang or you will suffer poor performance because parts of the jvm will be swapped in and out of memory. My AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsSearch for groups or messages To use Google Groups Discussions, please enable JavaScript in your browser settings, and then refresh this page. .

The best way to know if you have succeeded in changing the memory settings is to look at the console when Protege starts up.

Webmaster Offline Moderator Less More Posts: 1757 Karma: 24 Thank you received: 159 2 years 10 months ago #413 Is the schedule established to launch the task(s) now? There are two help pages on the wiki about this (I will have to investigate why there are two rather than one) [1,2]. Please, do the following: 1. This can be specified with the CATALINA_OPTS environment variable.

Would you know which parameters we could change to get the ontology uploaded? I did try with the same ontology but fewer than 100 individuals and still happens. You shouldn't go to 512M unless you have over 700M of memory or so. java:1508) at org.obolibrary.oboformat.parser.OBOFormatParser.parseWs(OBOFormatPars er.java:1372) at org.obolibrary.oboformat.parser.OBOFormatParser.getParseTag(OBOFormat Parser.java:885) at org.obolibrary.oboformat.parser.OBOFormatParser.parseHeaderClause(OBO FormatParser.java:509) -- View this message in context: http://protege-project.136.n4.nabble.com/OutOfMemory-java-heap-space-error-with-Protege-5-tp4662247.html Sent from the Protege Developer mailing list archive at Nabble.com. _______________________________________________ protege-dev mailing list

Jan 29, 2015 11:36:21 AM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 482093 Expected white space at pos: 6 LINE: . In VMOptions edit the -Xmx line to indicate the correct memory usage. more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Thanks for any help.

I know less about this but this would probably mean that increasing the heap size will only mean that it takes longer to run out of memory. -Timothy [1] http://protegewiki.stanford.edu/wiki/Setting_Heap_Size [2]